Here is a collection of the software tools/scripts that our lab has developed.
- Mutation calling pipeline for EMS-induced mutations (Snyman et al 2021 Heredity)
Link: https://github.com/Marelize007/EMS_mutagenesis_daphnia
- KEGG Pathway Enrichment Analysis for Daphnia pulex 3.0 genome (Xu et al 2022 Heredity).
Link: https://www.genome.jp/kegg/tool/map_pathway.html)
- Gene Annotation Easy Viewer (GAEV)
A tool to annotate the the tentative function and functional pathways of genes. The code is written and maintained by Trung Huynh. The link to this tool on github is: https://github.com/UtaDaphniaLab/Gene_Annotation_Easy_Viewer
The Daphnia protein fasta file used in this study can be downloaded at here.